Author Commichau, Fabian M.

• 2006 | Journal Article
  ​ ​Regulation of citB expression in Bacillus subtilis: integration of multiple metabolic signals in the citrate pool and by the general nitrogen regulatory system​
  Blencke, H.-M. ; Reif, I.; Commichau, F. M.; Detsch, C.; Wacker, I.; Ludwig, H. & Stulke, J.​ (2006) 
  Archives of Microbiology, 185(2) pp. 136​-146​.​ DOI: https://doi.org/10.1007/s00203-005-0078-0 
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• 2006 | Review
  ​ ​Regulatory links between carbon and nitrogen metabolism​
  Commichau, F. M.; Forchhammer, K.& Stulke, J.​ (2006)
  Current Opinion in Microbiology, 9​(2) pp. 167​-172​.​
  Current Biology Ltd. DOI: https://doi.org/10.1016/j.mib.2006.01.001 
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• 2007 | Journal Article
  ​ ​A regulatory protein-protein interaction governs glutamate biosynthesis in Bacillus subtilis: the glutamate dehydrogenase RocG moonlights in controlling the transcription factor GltC​
  Commichau, F. M.; Herzberg, C.; Tripal, P.; Valerius, O. & Stuelke, J.​ (2007) 
  Molecular Microbiology, 65(3) pp. 642​-654​.​ DOI: https://doi.org/10.1111/j.1365-2958.2007.05816.x 
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• 2007 | Journal Article
  ​ ​Characterization of Bacillus subtilis mutants with carbon source-independent glutamate biosynthesis​
  Commichau, F. M.; Wacker, I.; Schleider, J.; Blencke, H.-M. ; Reif, I.; Tripal, P. & Stuelke, J.​ (2007) 
  Journal of Molecular Microbiology and Biotechnology, 12(1-2) pp. 106​-113​.​ DOI: https://doi.org/10.1159/000096465 
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• 2007 | Journal Article
  ​ ​SPINE: A method for the rapid detection and analysis of protein-protein interactions in vivo​
  Herzberg, C.; Weidinger, L. A. F.; Doerrbecker, B.; Huebner, S.; Stuelke, J. & Commichau, F. M.​ (2007) 
  PROTEOMICS, 7(22) pp. 4032​-4035​.​ DOI: https://doi.org/10.1002/pmic.200700491 
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• 2008 | Review
  ​ ​Trigger enzymes: bifunctional proteins active in metabolism and in controlling gene expression​
  Commichau, F. M.& Stuelke, J.​ (2008)
  Molecular Microbiology, 67​(4) pp. 692​-702​.​
  Wiley-blackwell. DOI: https://doi.org/10.1111/j.1365-2958.2007.06071.x 
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• 2008 | Journal Article
  ​ ​Glutamate metabolism in Bacillus subtilis: Gene expression and enzyme activities evolved to avoid futile cycles and to allow rapid responses to perturbations of the system​
  Commichau, F. M.; Gunka, K.; Landmann, J. J. & Stuelke, J.​ (2008) 
  Journal of Bacteriology, 190(10) pp. 3557​-3564​.​ DOI: https://doi.org/10.1128/JB.00099-08 
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• 2009 | Journal Article
  ​ ​Novel Activities of Glycolytic Enzymes in Bacillus subtilis​
  Commichau, F. M.; Rothe, F. M.; Herzberg, C.; Wagner, E. M.; Hellwig, D.; Lehnik-Habrink, M. & Hammer, E. et al.​ (2009) 
  Molecular & Cellular Proteomics, 8(6) pp. 1350​-1360​.​ DOI: https://doi.org/10.1074/mcp.M800546-MCP200 
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• 2010 | Journal Article
  ​ ​Functional Dissection of a Trigger Enzyme: Mutations of the Bacillus subtilis Glutamate Dehydrogenase RocG That Affect Differentially Its Catalytic Activity and Regulatory Properties​
  Gunka, K.; Newman, J. A.; Commichau, F. M.; Herzberg, C.; Rodrigues, C.; Hewitt, L. & Lewis, R. J. et al.​ (2010) 
  Journal of Molecular Biology, 400(4) pp. 815​-827​.​ DOI: https://doi.org/10.1016/j.jmb.2010.05.055 
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• 2010 | Journal Article | 
  ​ ​In vitro Phosphorylation of Key Metabolic Enzymes from Bacillus subtilis: PrkC Phosphorylates Enzymes from Different Branches of Basic Metabolism​
  Pietack, N.; Becher, D.; Schmidl, S. R.; Saier, M. H.; Hecker, M.; Commichau, F. M. & Stuelke, J.​ (2010) 
  Journal of Molecular Microbiology and Biotechnology, 18(3) pp. 129​-140​.​ DOI: https://doi.org/10.1159/000308512 
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• 2011 | Journal Article
  ​ ​RNase Y in Bacillus subtilis: a Natively Disordered Protein That Is the Functional Equivalent of RNase E from Escherichia coli​
  Lehnik-Habrink, M.; Newman, J.; Rothe, F. M.; Solovyova, A. S.; Rodrigues, C.; Herzberg, C. & Commichau, F. M. et al.​ (2011) 
  Journal of Bacteriology, 193(19) pp. 5431​-5441​.​ DOI: https://doi.org/10.1128/JB.05500-11 
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• 2011 | Journal Article
  ​ ​Physical interactions between tricarboxylic acid cycle enzymes in Bacillus subtilis: Evidence for a metabolon​
  Meyer, F. M.; Gerwig, J.; Hammer, E.; Herzberg, C.; Commichau, F. M.; Voelker, U. & Stuelke, J.​ (2011) 
  Metabolic Engineering, 13(1) pp. 18​-27​.​ DOI: https://doi.org/10.1016/j.ymben.2010.10.001 
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• 2012 | Journal Article | Letter Note | 
  ​ ​A Mystery Unraveled: Essentiality of RNase III in Bacillus subtilis Is Caused by Resident Prophages​
  Commichau, F. M. & Stuelke, J.​ (2012) 
  PLoS Genetics, 8(12) art. e1003199​.​ DOI: https://doi.org/10.1371/journal.pgen.1003199 
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• 2012 | Journal Article
  ​ ​A High-Frequency Mutation in Bacillus subtilis: Requirements for the Decryptification of the gudB Glutamate Dehydrogenase Gene​
  Gunka, K.; Tholen, S.; Gerwig, J.; Herzberg, C.; Stuelke, J. & Commichau, F. M.​ (2012) 
  Journal of Bacteriology, 194(5) pp. 1036​-1044​.​ DOI: https://doi.org/10.1128/JB.06470-11 
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• 2012 | Review
  ​ ​Control of glutamate homeostasis in Bacillus subtilis: a complex interplay between ammonium assimilation, glutamate biosynthesis and degradation​
  Gunka, K.& Commichau, F. M.​ (2012)
  Molecular Microbiology, 85​(2) pp. 213​-224​.​
  Wiley-blackwell. DOI: https://doi.org/10.1111/j.1365-2958.2012.08105.x 
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• 2013 | Journal Article | 
  ​ ​Selection-Driven Accumulation of Suppressor Mutants in Bacillus subtilis: The Apparent High Mutation Frequency of the Cryptic gudB Gene and the Rapid Clonal Expansion of gudB(+) Suppressors Are Due to Growth under Selection​
  Gunka, K.; Stannek, L.; Care, R. A. & Commichau, F. M.​ (2013) 
  PLoS ONE, 8(6) art. e66120​.​ DOI: https://doi.org/10.1371/journal.pone.0066120 
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• 2013 | Review | 
  ​ ​Essential genes in Bacillus subtilis: a re-evaluation after ten years​
  Commichau, F. M.; Pietack, N.& Stuelke, J.​ (2013)
  Molecular BioSystems, 9​(6) pp. 1068​-1075​.​
  Royal Soc Chemistry. DOI: https://doi.org/10.1039/c3mb25595f 
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• 2013 | Journal Article | Letter Note
  ​ ​The resuscitation promotion concept extends to firmicutes​
  Commichau, F. M. & Halbedel, S.​ (2013) 
  Microbiology, 159 pp. 1298​-1300​.​ DOI: https://doi.org/10.1099/mic.0.069484-0 
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• 2014 | Journal Article
  ​ ​Complex formation between malate dehydrogenase and isocitrate dehydrogenase from Bacillus subtilis is regulated by tricarboxylic acid cycle metabolites​
  Bartholomae, M.; Meyer, F. M.; Commichau, F. M.; Burkovski, A.; Hillen, W. & Seidel, G.​ (2014) 
  FEBS Journal, 281(4) pp. 1132​-1143​.​
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• 2014 | Journal Article | 
  ​ ​SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information​
  Michna, R. H.; Commichau, F. M.; Toedter, D.; Zschiedrich, C. P. & Stuelke, J.​ (2014) 
  Nucleic Acids Research, 42(D1) pp. D692​-D698​.​ DOI: https://doi.org/10.1093/nar/gkt1002 
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• 2014 | Journal Article
  ​ ​Overexpression of a non-native deoxyxylulose-dependent vitamin B6 pathway in Bacillus subtilis for the production of pyridoxine​
  Commichau, F. M.; Alzinger, A.; Sande, R.; Bretzel, W.; Meyer, F. M.; Chevreux, B. & Wyss, M. et al.​ (2014) 
  Metabolic Engineering, 25 pp. 38​-49​.​ DOI: https://doi.org/10.1016/j.ymben.2014.06.007 
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• 2014 | Journal Article
  ​ ​Monitoring Intraspecies Competition in a Bacterial Cell Population by Cocultivation of Fluorescently Labelled Strains​
  Stannek, L.; Egelkamp, R.; Gunka, K. & Commichau, F. M.​ (2014) 
  Journal of Visualized Experiments,(83) art. e51196​.​ DOI: https://doi.org/10.3791/51196 
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• 2014 | Journal Article | 
  ​ ​Bacillus subtilis RecA and its accessory factors, RecF, RecO, RecR and RecX, are required for spore resistance to DNA double-strand break​
  Vlasic, I.; Mertens, R.; Seco, E. M.; Carrasco, B.; Ayora, S.; Reitz, G. & Commichau, F. M. et al.​ (2014) 
  Nucleic Acids Research, 42(4) pp. 2295​-2307​.​ DOI: https://doi.org/10.1093/nar/gkt1194 
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• 2014 | Review
  ​ ​Bacillus subtilis and Escherichia coli essential genes and minimal cell factories after one decade of genome engineering​
  Juhas, M.; Reuss, D. R.; Zhu, B.& Commichau, F. M.​ (2014)
  Microbiology, 160​ pp. 2341​-2351​.​
  Soc General Microbiology. DOI: https://doi.org/10.1099/mic.0.079376-0 
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• 2014 | Journal Article
  ​ ​The gamma-Aminobutyrate Permease GabP Serves as the Third Proline Transporter of Bacillus subtilis​
  Zaprasis, A.; Hoffmann, T.; Stannek, L.; Gunka, K.; Commichau, F. M. & Bremer, E.​ (2014) 
  Journal of Bacteriology, 196(3) pp. 515​-526​.​ DOI: https://doi.org/10.1128/JB.01128-13 
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• 2015 | Journal Article | 
  ​ ​Factors that mediate and prevent degradation of the inactive and unstable GudB protein in Bacillus subtilis​
  Stannek, L.; Gunka, K.; Care, R. A.; Gerth, U. & Commichau, F. M.​ (2015) 
  Frontiers in Microbiology, 5 art. 758​.​ DOI: https://doi.org/10.3389/fmicb.2014.00758 
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• 2015 | Journal Article
  ​ ​Engineering Bacillus subtilis for the conversion of the antimetabolite 4-hydroxy-L-threonine to pyridoxine​
  Commichau, F. M.; Alzinger, A.; Sande, R.; Bretzel, W.; Reuss, D. R.; Dormeyer, M. & Chevreux, B. et al.​ (2015) 
  Metabolic Engineering, 29 pp. 196​-207​.​ DOI: https://doi.org/10.1016/j.ymben.2015.03.007 
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• 2015 | Journal Article
  ​ ​novel engineering tool in the Bacillus subtilis toolbox: inducer-free activation of gene expression by selection-driven promoter decryptification​
  Dormeyer, M.; Egelkamp, R.; Thiele, M. J.; Hammer, E.; Gunka, K.; Stannek, L. & Voelker, U. et al.​ (2015) 
  Microbiology, 161 pp. 354​-361​.​ DOI: https://doi.org/10.1099/mic.0.000001 
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• 2015 | Journal Article
  ​ ​Evidence for synergistic control of glutamate biosynthesis by glutamate dehydrogenases and glutamate in Bacillus subtilis​
  Stannek, L.; Thiele, M. J.; Ischebeck, T.; Gunka, K.; Hammer, E.; Voelker, U. & Commichau, F. M.​ (2015) 
  Environmental Microbiology, 17(9) pp. 3379​-3390​.​ DOI: https://doi.org/10.1111/1462-2920.12813 
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• 2016 | Journal Article
  ​ ​Salt-sensitivity of sigma(H) and Spo0A prevents sporulation of Bacillus subtilis at high osmolarity avoiding death during cellular differentiation​
  Widderich, N.; Rodrigues, C. D. A.; Commichau, F. M.; Fischer, K. E.; Ramirez-Guadiana, F. H.; Rudner, D. Z. & Bremer, E.​ (2016) 
  Molecular Microbiology, 100(1) pp. 108​-124​.​ DOI: https://doi.org/10.1111/mmi.13304 
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• 2016 | Journal Article
  ​ ​Phenotypes Associated with the Essential Diadenylate Cyclase CdaA and Its Potential Regulator CdaR in the Human Pathogen Listeria monocytogenes​
  Rismondo, J.; Gibhardt, J.; Rosenberg, J.; Kaever, V.; Halbedel, S. & Commichau, F. M.​ (2016) 
  Journal of Bacteriology, 198(3) pp. 416​-426​.​ DOI: https://doi.org/10.1128/JB.00845-15 
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• 2016 | Journal Article
  ​ ​ThrR, a DNA-binding transcription factor involved in controlling threonine biosynthesis in Bacillus subtilis​
  Rosenberg, J.; Mueller, P.; Lentes, S.; Thiele, M. J.; Zeigler, D. R.; Toedter, D. & Paulus, H. et al.​ (2016) 
  Molecular Microbiology, 101(5) pp. 879​-893​.​ DOI: https://doi.org/10.1111/mmi.13429 
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• 2017 | Journal Article
  ​ ​Control of potassium homeostasis is an essential function of the second messenger cyclic di-AMP in Bacillus subtilis​
  Gundlach, J.; Herzberg, C.; Kaever, V.; Gunka, K.; Hoffmann, T.; Weiss, M. & Gibhardt, J. et al.​ (2017) 
  Science Signaling, 10(475) art. eaal3011​.​ DOI: https://doi.org/10.1126/scisignal.aal3011 
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• 2017 | Journal Article
  ​ ​Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism​
  Reuss, D. R.; Altenbuchner, J.; Maeder, U.; Rath, H.; Ischebeck, T.; Sappa, P. K. & Thuermer, A. et al.​ (2017) 
  Genome Research, 27(2) pp. 289​-299​.​ DOI: https://doi.org/10.1101/gr.215293.116 
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• 2017 | Journal Article
  ​ ​Hierarchical mutational events compensate for glutamate auxotrophy of a Bacillus subtilis gltC mutant​
  Dormeyer, M.; Luebke, A. L.; Mueller, P.; Lentes, S.; Reuss, D. R.; Thuermer, A. & Stuelke, J. et al.​ (2017) 
  Environmental Microbiology Reports, 9(3) pp. 279​-289​.​ DOI: https://doi.org/10.1111/1758-2229.12531 
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• 2017 | Review
  ​ ​Vitamin B6 metabolism in microbes and approaches for fermentative production​
  Rosenberg, J.; Ischebeck, T.& Commichau, F. M.​ (2017)
  Biotechnology Advances, 35​(1) pp. 31​-40​.​
  Pergamon-elsevier Science Ltd. DOI: https://doi.org/10.1016/j.biotechadv.2016.11.004 
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• 2018 | Journal Article
  ​ ​Ein bakterielles System zum Nachweis und Abbau des Totalherbizids Glyphosat​
  Schulz, L. M.; Göttingen, I.-T. & Commichau, F. M.​ (2018) 
  BIOspektrum, 24(6) pp. 659​-660​.​ DOI: https://doi.org/10.1007/s12268-018-0969-7 
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• 2018 | Journal Article
  ​ ​Coping with an Essential Poison: a Genetic Suppressor Analysis Corroborates a Key Function of c-di-AMP in Controlling Potassium Ion Homeostasis in Gram-Positive Bacteria​
  Commichau, F. M. & Stülke, J.​ (2018) 
  Journal of Bacteriology, 200(12).​ DOI: https://doi.org/10.1128/JB.00166-18 
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• 2019 | Journal Article
  ​ ​Identification of the first glyphosate transporter by genomic adaptation​
  Wicke, D.; Schulz, L. M.; Lentes, S.; Scholz, P.; Poehlein, A.; Gibhardt, J. & Daniel, R. et al.​ (2019) 
  Environmental Microbiology, 21(4) pp. 1287​-1305​.​ DOI: https://doi.org/10.1111/1462-2920.14534 
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• 2019 | Journal Article | 
  ​ ​A Survey of Pyridoxal 5′-Phosphate-Dependent Proteins in the Gram-Positive Model Bacterium Bacillus subtilis​
  Richts, B.; Rosenberg, J. & Commichau, F. M.​ (2019) 
  Frontiers in Molecular Biosciences, 6 art. 32​.​ DOI: https://doi.org/10.3389/fmolb.2019.00032 
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• 2019 | Journal Article | 
  ​ ​Microbial cell factories for the sustainable manufacturing of B vitamins​
  Acevedo-Rocha, C. G.; Gronenberg, L. S.; Mack, M.; Commichau, F. M. & Genee, H. J.​ (2019) 
  Current Opinion in Biotechnology, 56 pp. 18​-29​.​ DOI: https://doi.org/10.1016/j.copbio.2018.07.006 
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• 2020 | Journal Article
  ​ ​Ein bakterielles System zum Nachweis und Abbau des Totalherbizids Glyphosat​
  Bremenkamp, R.; Meißner, J. & Commichau, F. M.​ (2020) 
  Biologie in unserer Zeit, 50(1) pp. 15​-17​.​ DOI: https://doi.org/10.1002/biuz.202070107 
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• 2020 | Journal Article
  ​ ​Complete Genome Sequence of the Prototrophic Bacillus subtilis subsp. subtilis Strain SP1​
  Richts, B.; Hertel, R.; Potot, S.; Poehlein, A.; Daniel, R.; Schyns, G. & Prágai, Z. et al.​ (2020) 
  Microbiology Resource Announcements, 9(32) art. e00825-20​.​ DOI: https://doi.org/10.1128/MRA.00825-20 
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• 2021 | Journal Article
  ​ ​Characterization of glyphosate‐resistant Burkholderia anthina and Burkholderia cenocepacia isolates from a commercial Roundup® solution​
  Hertel, R.; Schöne, K.; Mittelstädt, C.; Meißner, J.; Zschoche, N.; Collignon, M. & Kohler, C. et al.​ (2021) 
  Environmental Microbiology Reports,.​ DOI: https://doi.org/10.1111/1758-2229.13022 
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• 2022 | Journal Article
  ​ ​Adaptation of Listeria monocytogenes to perturbation of c‐di‐AMP metabolism underpins its role in osmoadaptation and identifies a fosfomycin uptake system​
  Wang, M.; Wamp, S.; Gibhardt, J.; Holland, G.; Schwedt, I.; Schmidtke, K. & Scheibner, K. et al.​ (2022) 
  Environmental Microbiology, art. 1462-2920.16084​.​ DOI: https://doi.org/10.1111/1462-2920.16084 
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• 2022 | Journal Article
  ​ ​The Bacillus phage SPβ and its relatives: a temperate phage model system reveals new strains, species, prophage integration loci, conserved proteins and lysogeny management components​
  Kohm, K.; Floccari, V. A.; Lutz, V. T.; Nordmann, B.; Mittelstädt, C.; Poehlein, A. & Dragoš, A. et al.​ (2022) 
  Environmental Microbiology,.​ DOI: https://doi.org/10.1111/1462-2920.15964 
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• 2022 | Journal Article | Research Paper | 
  ​ ​L-Proline Synthesis Mutants of Bacillus subtilis Overcome Osmotic Sensitivity by Genetically Adapting L-Arginine Metabolism​
  Stecker, D.; Hoffmann, T.; Link, H.; Commichau, F. M. & Bremer, E.​ (2022) 
  Frontiers in Microbiology, 13.​ DOI: https://doi.org/10.3389/fmicb.2022.908304 
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• 2023 | Journal Article
  ​ ​Genomic adaptation of Burkholderia anthina to glyphosate uncovers a novel herbicide resistance mechanism​
  Schwedt, I.; Collignon, M.; Mittelstädt, C.; Giudici, F.; Rapp, J.; Meißner, J. & Link, H. et al.​ (2023) 
  Environmental Microbiology Reports, art. 1758-2229.13184​.​ DOI: https://doi.org/10.1111/1758-2229.13184 
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• 2023 | Journal Article
  ​ ​The low mutational flexibility of the EPSP synthase in Bacillus subtilis is due to a higher demand for shikimate pathway intermediates​
  Schwedt, I.; Schöne, K.; Eckert, M.; Pizzinato, M.; Winkler, L.; Knotkova, B. & Richts, B. et al.​ (2023) 
  Environmental Microbiology, art. 1462-2920.16518​.​ DOI: https://doi.org/10.1111/1462-2920.16518 
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• 2024 | Journal Article
  ​ ​Control of asparagine homeostasis in Bacillus subtilis : identification of promiscuous amino acid importers and exporters​
  Meißner, J.; Königshof, M.; Wrede, K.; Warneke, R.; Mardoukhi, M. S. Y.; Commichau, F. M. & Stülke, J.​ (2024) 
  Journal of Bacteriology, art. e00420-23​.​ DOI: https://doi.org/10.1128/jb.00420-23 
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• 2024 | Journal Article
  ​ ​Biodegradation of selected aminophosphonates by the bacterial isolate Ochrobactrum sp. BTU1​
  Riedel, R.; Commichau, F. M.; Benndorf, D.; Hertel, R.; Holzer, K.; Hoelzle, L. E. & Mardoukhi, M. S. Y. et al.​ (2024) 
  Microbiological Research, 280 art. 127600​.​ DOI: https://doi.org/10.1016/j.micres.2024.127600 
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• 2024 | Preprint
  ​ ​RfaA (YqhY), a novel adaptor protein, controls metabolite-sensitive protein degradation in Bacillus subtilis​
  Stulke, J.; Wicke, D.; Lentes, S.; Herrfurth, C.; Tödter, D.; Stannek-Goebel, L.& Feussner, I. et al.​ (2024). DOI: https://doi.org/10.21203/rs.3.rs-3970019/v1 10.1101/2024.02.19.580884 
  ​Details  DOI; DOI 

• 2024 | Journal Article
  ​ ​Metabolic rewiring enables ammonium assimilation via a non‐canonical fumarate‐based pathway​
  Mardoukhi, M. S. Y.; Rapp, J.; Irisarri, I.; Gunka, K.; Link, H.; Marienhagen, J. & de Vries, J. et al.​ (2024) 
  Microbial Biotechnology, 17(3) art. e14429​.​ DOI: https://doi.org/10.1111/1751-7915.14429 
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