Author Nacke, Heiko
-
2010 | Journal Article
Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes
Will, C.; Thuermer, A.; Wollherr, A.; Nacke, H.; Herold, N.; Schrumpf, M. & Gutknecht, J. et al. (2010)
Applied and Environmental Microbiology, 76(20) pp. 6751-6759. DOI: https://doi.org/10.1128/AEM.01063-10
Details DOI PMID PMC WoS
-
2011 | Journal Article |
Pyrosequencing-Based Assessment of Bacterial Community Structure Along Different Management Types in German Forest and Grassland Soils
Nacke, H.; Thuermer, A.; Wollherr, A.; Will, C.; Hodac, L.; Herold, N. & Schoening, I. et al. (2011)
PLoS ONE, 6(2) art. e17000. DOI: https://doi.org/10.1371/journal.pone.0017000
Details DOI PMID PMC WoS
-
2011 | Journal Article
Identification of novel lipolytic genes and gene families by screening of metagenomic libraries derived from soil samples of the German Biodiversity Exploratories
Nacke, H.; Will, C.; Herzog, S.; Nowka, B.; Engelhaupt, M. & Daniel, R. (2011)
FEMS Microbiology Ecology, 78(1) pp. 188-201. DOI: https://doi.org/10.1111/j.1574-6941.2011.01088.x
Details DOI PMID PMC WoS
-
2012 | Journal Article |
General Relationships between Abiotic Soil Properties and Soil Biota across Spatial Scales and Different Land-Use Types
Birkhofer, K.; Schöning, I.; Alt, F.; Herold, N.; Klarner, B. ; Maraun, M. & Marhan, S. et al. (2012)
PLoS ONE, 7(8) art. e43292. DOI: https://doi.org/10.1371/journal.pone.0043292
Details DOI
-
2012 | Journal Article |
Identification and characterization of novel cellulolytic and hemicellulolytic genes and enzymes derived from German grassland soil metagenomes
Nacke, H.; Engelhaupt, M.; Brady, S.; Fischer, C.; Tautzt, J. & Daniel, R. (2012)
Biotechnology Letters, 34(4) pp. 663-675. DOI: https://doi.org/10.1007/s10529-011-0830-2
Details DOI PMID PMC WoS
-
2012 | Journal Article
Assessing group differences in biodiversity by simultaneously testing a user-defined selection of diversity indices
Pallmann, P.; Schaarschmidt, F.; Hothorn, L. A.; Fischer, C.; Nacke, H.; Priesnitz, K. U. & Schork, N. J. (2012)
Molecular Ecology Resources, 12(6) pp. 1068-1078. DOI: https://doi.org/10.1111/1755-0998.12004
Details DOI PMID PMC WoS
-
2013 | Journal Article
High abundance of heterotrophic prokaryotes in hydrothermal springs of the Azores as revealed by a network of 16S rRNA gene-based methods
Sahm, K.; John, P.; Nacke, H.; Wemheuer, B. ; Grote, R.; Daniel, R. & Antranikian, G. (2013)
Extremophiles, 17(4) pp. 649-662. DOI: https://doi.org/10.1007/s00792-013-0548-2
Details DOI PMID PMC WoS
-
2014 | Book Chapter
Approaches in Metagenome Research: Progress and Challenges
Nacke, H.& Daniel, R. (2014)
In:Nelson, Karen E. (Ed.), Encyclopedia of Metagenomics pp. 1-7. New York: Springer. DOI: https://doi.org/10.1007/978-1-4614-6418-1_790-3
Details DOI
-
2014 | Journal Article
Wastewater Irrigation Increases the Abundance of Potentially Harmful Gammaproteobacteria in Soils in Mezquital Valley, Mexico
Broszat, M.; Nacke, H.; Blasi, R.; Siebe, C.; Huebner, J.; Daniel, R. & Grohmann, E. (2014)
Applied and Environmental Microbiology, 80(17) pp. 5282-5291. DOI: https://doi.org/10.1128/AEM.01295-14
Details DOI PMID PMC WoS
-
2014 | Journal Article
Land Use Type Significantly Affects Microbial Gene Transcription in Soil
Nacke, H.; Fischer, C.; Thuermer, A.; Meinicke, P. & Daniel, R. (2014)
Microbial Ecology, 67(4) pp. 919-930. DOI: https://doi.org/10.1007/s00248-014-0377-6
Details DOI PMID PMC WoS
-
2014 | Journal Article
Microbial community composition and dynamics in high-temperature biogas reactors using industrial bioethanol waste as substrate
Roeske, I.; Sabra, W.; Nacke, H.; Daniel, R.; Zeng, A.-P.; Antranikian, G. & Sahm, K. (2014)
Applied Microbiology and Biotechnology, 98(21) pp. 9095-9106. DOI: https://doi.org/10.1007/s00253-014-5906-1
Details DOI PMID PMC WoS
-
2014 | Journal Article | Research Paper
Interannual variation in land-use intensity enhances grassland multidiversity
Allan, E.; Bossdorf, O.; Dormann, C. F.; Prati, D.; Gossner, M. M.; Tscharntke, T. & Bluethgen, N. et al. (2014)
Proceedings of the National Academy of Sciences of the United States of America, 111(1) pp. 308-313. DOI: https://doi.org/10.1073/pnas.1312213111
Details DOI PMID PMC WoS
-
2015 | Conference Abstract
MICROALGAE COMMUNITIES IN ANTARCTIC SOILS: CHANGES ALONG SOIL DEVELOPMENTAL STAGES AND TESTING FOR GEOGRAPHICAL DISTRIBUTION
Rybalka, N.; Boy, J.; Nacke, H.; Daniel, R. & Friedl, T. (2015)
European Journal of Phycology, 50
Abingdon: Taylor & Francis Ltd.
Details WoS
-
2015 | Journal Article | Research Paper |
Impact of Lowland Rainforest Transformation on Diversity and Composition of Soil Prokaryotic Communities in Sumatra (Indonesia)
Schneider, D.; Engelhaupt, M.; Allen, K.; Kurniawan, S.; Krashevska, V.; Heinemann, M. & Nacke, H. et al. (2015)
Frontiers in Microbiology, 6 art. 1339. DOI: https://doi.org/10.3389/fmicb.2015.01339
Details DOI PMID PMC WoS
-
2016 | Journal Article |
Driving forces of soil bacterial community structure, diversity, and function in temperate grasslands and forests
Kaiser, K. ; Wemheuer, B. ; Korolkow, V.; Wemheuer, F. ; Nacke, H.; Schöning, I. & Schrumpf, M. et al. (2016)
Scientific Reports, 6 art. 33696. DOI: https://doi.org/10.1038/srep33696
Details DOI PMID PMC WoS
-
2016 | Journal Article
Estimates of Soil Bacterial Ribosome Content and Diversity Are Significantly Affected by the Nucleic Acid Extraction Method Employed
Wüst, P. K.; Nacke, H.; Kaiser, K. ; Marhan, S.; Sikorski, J.; Kandeler, E. & Daniel, R. et al. (2016)
Applied and Environmental Microbiology, 82(9) pp. 2595-2607. DOI: https://doi.org/10.1128/AEM.00019-16
Details DOI PMID PMC WoS
-
2016 | Journal Article |
Fine Spatial Scale Variation of Soil Microbial Communities under European Beech and Norway Spruce
Nacke, H.; Goldmann, K.; Schöning, I.; Pfeiffer, B.; Kaiser, K.; Castillo-Villamizar, G. A. & Schrumpf, M. et al. (2016)
Frontiers in Microbiology, 7 art. 2067. DOI: https://doi.org/10.3389/fmicb.2016.02067
Details DOI PMID PMC
-
2017 | Journal Article
Genome Sequence of Creatinine-Fermenting Tissierella creatinophila Strain KRE 4T (DSM 6911)
Nacke, H.; Daniel, R. & Poehlein, A. (2017)
Genome Announcements, 5(12). DOI: https://doi.org/10.1128/genomeA.00051-17
Details DOI
-
2017 | Journal Article
Links between seawater flooding, soil ammonia oxidiser communities and their response to changes in salinity
Nacke, H.; Schöning, I.; Schindler, M.; Schrumpf, M.; Daniel, R. ; Nicol, G. W. & Prosser, J. I. (2017)
FEMS Microbiology Ecology, 93(11). DOI: https://doi.org/10.1093/femsec/fix144
Details DOI
-
2018 | Journal Article
Post-harvest N 2 O and CO 2 emissions related to plant residue incorporation of oilseed rape and barley straw depend on soil NO 3 - content
Köbke, S.; Senbayram, M. ; Pfeiffer, B. ; Nacke, H. & Dittert, K. (2018)
Soil and Tillage Research, 179 pp. 105-113. DOI: https://doi.org/10.1016/j.still.2018.01.013
Details DOI
-
2018 | Journal Article |
Comparative Genomics and Description of Putative Virulence Factors of Melissococcus plutonius, the Causative Agent of European Foulbrood Disease in Honey Bees
Djukic, M.; Erler, S.; Leimbach, A.; Grossar, D.; Charrière, J.-D.; Gauthier, L. & Hartken, D. et al. (2018)
Genes, 9(8) art. 419. DOI: https://doi.org/10.3390/genes9080419
Details DOI PMID PMC
-
2019 | Journal Article |
Discovery of Novel Antibiotic Resistance Determinants in Forest and Grassland Soil Metagenomes
Willms, I. M.; Kamran, A.; Aßmann, N. F.; Krone, D.; Bolz, S. H.; Fiedler, F. & Nacke, H. (2019)
Frontiers in Microbiology, 10 art. 460. DOI: https://doi.org/10.3389/fmicb.2019.00460
Details DOI
-
2019 | Journal Article |
Functional Metagenomics Reveals a New Catalytic Domain, the Metallo-β-Lactamase Superfamily Domain, Associated with Phytase Activity
Castillo Villamizar, G. A.; Funkner, K.; Nacke, H.; Foerster, K. & Daniel, R. (2019)
mSphere, 4(3). DOI: https://doi.org/10.1128/mSphere.00167-19
Details DOI PMID PMC
-
2019 | Journal Article |
Functional Metagenomics Reveals an Overlooked Diversity and Novel Features of Soil-Derived Bacterial Phosphatases and Phytases
Castillo Villamizar, G. A.; Nacke, H.; Boehning, M.; Herz, K. & Daniel, R. (2019)
mBio, 10(1) art. e01966-18. DOI: https://doi.org/10.1128/mBio.01966-18
Details DOI PMID PMC
-
2019 | Journal Article |
Characteristics of the First Protein Tyrosine Phosphatase with Phytase Activity from a Soil Metagenome
Castillo Villamizar, G. A.; Nacke, H.; Griese, L.; Tabernero, L.; Funkner, K. & Daniel, R. (2019)
Genes, 10(2). DOI: https://doi.org/10.3390/genes10020101
Details DOI PMID PMC
-
2020 | Journal Article |
Distribution of Medically Relevant Antibiotic Resistance Genes and Mobile Genetic Elements in Soils of Temperate Forests and Grasslands Varying in Land Use
Willms, I. M.; Yuan, J.; Penone, C.; Goldmann, K.; Vogt, J.; Wubet, T. & Schöning, I. et al. (2020)
Genes, 11(2) pp. 150. DOI: https://doi.org/10.3390/genes11020150
Details DOI
-
2020 | Journal Article |
Metagenome-Assembled Genome Sequences from an Anoxygenic Photosynthetic Consortium Involved in Sulfur Cycling
Winkler, L.; Münker, M. F.; Brunotte, S.; Rohlmann, L.; Diez Alfageme, A.; Poehlein, A. & Hoppert, M. et al. (2020)
Microbiology Resource Announcements, 9(40) art. e00819-20. DOI: https://doi.org/10.1128/MRA.00819-20
Details DOI
-
2020 | Journal Article |
Globally Abundant “ Candidatus Udaeobacter” Benefits from Release of Antibiotics in Soil and Potentially Performs Trace Gas Scavenging
Willms, I. M.; Rudolph, A. Y.; Göschel, I.; Bolz, S. H.; Schneider, D.; Penone, C. & Poehlein, A. et al. (2020)
mSphere, 5(4). DOI: https://doi.org/10.1128/mSphere.00186-20
Details DOI
-
2020 | Journal Article
Metagenome Sequences of a Wastewater Treatment Plant Digester Sludge-Derived Enrichment Culture
Nacke, H.; Kirck, L. L.; Schwarz, S.; Schneider, D.; Poehlein, A. & Daniel, R. (2020)
Microbiology Resource Announcements, 9(32) art. e00712-20. DOI: https://doi.org/10.1128/MRA.00712-20
Details DOI
-
2021 | Journal Article
The ubiquitous soil verrucomicrobial clade ‘ Candidatus Udaeobacter’ shows preferences for acidic pH
Willms, I. M.; Bolz, S. H.; Yuan, J.; Krafft, L.; Schneider, D.; Schöning, I. & Schrumpf, M. et al. (2021)
Environmental Microbiology Reports, art. 1758-2229.13006. DOI: https://doi.org/10.1111/1758-2229.13006
Details DOI
-
2021 | Journal Article |
Novel Soil-Derived Beta-Lactam, Chloramphenicol, Fosfomycin and Trimethoprim Resistance Genes Revealed by Functional Metagenomics
Willms, I.; Grote, M.; Kocatürk, M.; Singhoff, L.; Kraft, A.; Bolz, S. & Nacke, H. (2021)
Antibiotics, 10(4) pp. 378. DOI: https://doi.org/10.3390/antibiotics10040378
Details DOI
-
2021 | Journal Article | Research Paper |
Metagenome-Assembled Genome Sequences of a Biofilm Derived from Marsberg Copper Mine
Arif, S.; Nacke, H. & Hoppert, M. (2021)
Microbiology Resource Announcements, 10(2). DOI: https://doi.org/10.1128/MRA.01253-20
Details DOI
-
2021 | Journal Article | Research Paper |
Sasso Pisano Geothermal Field Environment Harbours Diverse Ktedonobacteria Representatives and Illustrates Habitat-Specific Adaptations
Arif, S.; Willenberg, C.; Dreyer, A.; Nacke, H. & Hoppert, M. (2021)
Microorganisms, 9(7) pp. 1402. DOI: https://doi.org/10.3390/microorganisms9071402
Details DOI
-
2022 | Journal Article |
Composition and niche-specific characteristics of microbial consortia colonizing Marsberg copper mine in the Rhenish Massif
Arif, S.; Nacke, H.; Schliekmann, E.; Reimer, A. ; Arp, G. & Hoppert, M. (2022)
Biogeosciences, 19(20) pp. 4883-4902. DOI: https://doi.org/10.5194/bg-19-4883-2022
Details DOI
-
2023 | Book Chapter
Functional Metagenomics Approach for the Discovery of Novel Genes Encoding Phosphatase Activity
Castillo Villamizar, G. A.; Nacke, H.& Daniel, R. (2023)
In:Streit, Wolfgang R.; Daniel, Rolf (Eds.), Metagenomics : Methods and Protocols pp. 103-114. New York, NY: Springer US. DOI: https://doi.org/10.1007/978-1-0716-2795-2_7
Details DOI