Author Stanke, Mario
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2003 | Journal Article
Gene prediction with a hidden Markov model and a new intron submodel
Stanke, M. & Waack, S. (2003)
Bioinformatics, 19 pp. II215-II225. DOI: https://doi.org/10.1093/bioinformatics/btg1080
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2004 | Journal Article
Sequential selection of random vectors under a sum constraint
Stanke, M. (2004)
Journal of Applied Probability, 41(1) pp. 131-146. DOI: https://doi.org/10.1239/jap/1077134673
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2004 | Journal Article |
AUGUSTUS: a web server for gene finding in eukaryotes
Stanke, M.; Steinkamp, R.; Waack, S. & Morgenstern, B. (2004)
Nucleic Acids Research, 32 pp. W309-W312. DOI: https://doi.org/10.1093/nar/gkh379
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2005 | Journal Article |
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
Stanke, M. & Morgenstern, B. (2005)
Nucleic Acids Research, 33 pp. W465-W467. DOI: https://doi.org/10.1093/nar/gki458
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2006 | Conference Abstract
The possible role of an ec nitric oxide synthase gene-polymorphism for the development of severe hypertensive endorgan damages and vascular events
Schulz, E. G.; Stanke, M.; Bargfeldt, M.; Ibrovic, S.; Fischer, N. & Mueller, G. A. (2006)
Journal of Hypertension, 24 16th European Meeting on Hypertension, Madrid, SPAIN.
Philadelphia: Lippincott Williams & Wilkins.
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2006 | Journal Article |
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
Stanke, M.; Tzvetkova, A. & Morgenstern, B. (2006)
Genome Biology, 7 art. S11. DOI: https://doi.org/10.1186/gb-2006-7-s1-s11
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2006 | Journal Article |
AUGUSTUS: ab initio prediction of alternative transcripts
Stanke, M.; Keller, O.; Gunduz, I.; Hayes, A.; Waack, S. & Morgenstern, B. (2006)
NUCLEIC ACIDS RESEARCH, 34 pp. W435-W439. DOI: https://doi.org/10.1093/nar/gkl200
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2006 | Journal Article |
jpHMM at GOBICS: a web server to detect genomic recombinations in HIV-1
Zhang, M.; Schultz, A.-K.; Calef, C.; Kuiken, C.; Leitner, T.; Korber, B. & Morgenstern, B. et al. (2006)
NUCLEIC ACIDS RESEARCH, 34 pp. W463-W465. DOI: https://doi.org/10.1093/nar/gkl255
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2006 | Journal Article |
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Stanke, M.; Schoffmann, O.; Morgenstern, B. & Waack, S. (2006)
BMC Bioinformatics, 7 art. 62. DOI: https://doi.org/10.1186/1471-2105-7-62
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2006 | Journal Article |
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Schultz, A.-K.; Zhang, M.; Leitner, T.; Kuiken, C.; Korber, B.; Morgenstern, B. & Stanke, M. (2006)
BMC Bioinformatics, 7 art. 265. DOI: https://doi.org/10.1186/1471-2105-7-265
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2007 | Journal Article
Draft genome of the filarial nematode parasite Brugia malayi
Ghedin, E.; Wang, S.; Spiro, D.; Caler, E.; Zhao, Q. I.; Crabtree, J. & Allen, J. E. et al. (2007)
Science, 317(5845) pp. 1756-1760. DOI: https://doi.org/10.1126/science.1145406
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2008 | Journal Article |
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
Keller, O.; Odronitz, F.; Stanke, M.; Kollmar, M. & Waack, S. (2008)
BMC Bioinformatics, 9 art. 278. DOI: https://doi.org/10.1186/1471-2105-9-278
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2009 | Journal Article | Research Paper
AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis
Sommerfeld, D.; Lingner, T.; Stanke, M.; Morgenstern, B. & Richter, H. (2009)
Future Generation Computer Systems, 25(3) pp. 337-345. DOI: https://doi.org/10.1016/j.future.2008.05.010
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2009 | Conference Abstract
Diet in urticaria
Bunselmeyer, B.; Laubach, H. J.; Schiller, M.; Stanke, M.; Luger, T. A. & Brehler, R. (2009)
JDDG Journal der Deutschen Dermatologischen Gesellschaft, 7
Malden: Wiley-blackwell Publishing, Inc.
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2009 | Journal Article
jpHMM: Improving the reliability of recombination prediction in HIV-1
Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B. & Stanke, M. (2009)
Nucleic Acids Research, 37 pp. W647-W651. DOI: https://doi.org/10.1093/nar/gkp371
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2009 | Journal Article
Incremental build-up food challenge - a new diagnostic approach to evaluate pseudoallergic reactions in chronic urticaria: a pilot study
Bunselmeyer, B.; Laubach, H. J.; Schiller, M.; Stanke, M.; Luger, T. A. & Brehler, R. (2009)
Clinical & Experimental Allergy, 39(1) pp. 116-126. DOI: https://doi.org/10.1111/j.1365-2222.2008.03110.x
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2009 | Journal Article |
The genome of the blood fluke Schistosoma mansoni
Berriman, M.; Haas, B. J.; LoVerde, P. T.; Wilson, R. A.; Dillon, G. P.; Cerqueira, G. C. & Mashiyama, S. T. et al. (2009)
Nature, 460(7253) pp. 352-U65. DOI: https://doi.org/10.1038/nature08160
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2010 | Journal Article
jpHMM: improving the reliability of recombination prediction in HIV-1
Schultz, A.-K.; Zhang, M.; Bulla, I.; Leitner, T.; Korber, B.; Morgenstern, B. & Stanke, M. (2010)
Nucleic Acids Research, 38(3) pp. 1059-1059. DOI: https://doi.org/10.1093/nar/gkq015
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2010 | Journal Article |
The role of recombination in the emergence of a complex and dynamic HIV epidemic
Zhang, M.; Foley, B.; Schultz, A.-K.; Macke, J. P.; Bulla, I.; Stanke, M. & Morgenstern, B. et al. (2010)
Retrovirology, 7(25)-15. DOI: https://doi.org/10.1186/1742-4690-7-25
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2010 | Journal Article | Research Paper |
The Amphimedon queenslandica genome and the evolution of animal complexity
Srivastava, M.; Simakov, O.; Chapman, J.; Fahey, B.; Gauthier, M. E. A.; Mitros, T. & Richards, G. S. et al. (2010)
Nature, 466(7307) pp. 720-726. DOI: https://doi.org/10.1038/nature09201
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