Author Thomas, Torsten

• 2012 | Journal Article | 
  ​ ​Phaeobacter gallaeciensis genomes from globally opposite locations reveal high similarity of adaptation to surface life​
  Thole, S.; Kalhoefer, D.; Voget, S.; Berger, M.; Engelhardt, T.; Liesegang, H. & Wollherr, A. et al.​ (2012) 
  The ISME Journal, 6(12) pp. 2229​-2244​.​ DOI: https://doi.org/10.1038/ismej.2012.62 
  ​Details  DOI  PMID  PMC  WoS 

• 2017 | Journal Article | 
  ​ ​HgtSIM: a simulator for horizontal gene transfer (HGT) in microbial communities.​
  Song, W.; Steensen, K. & Thomas, T.​ (2017) 
  PeerJ, 5 art. e4015​.​ DOI: https://doi.org/10.7717/peerj.4015 
  ​Details  DOI  PMID  PMC 

• 2018 | Preprint
  ​ ​Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences​
  Wemheuer, F. ; Taylor, J. A.; Daniel, R. ; Johnston, E.; Meinicke, P. ; Thomas, T.& Wemheuer, B. ​ (2018). DOI: https://doi.org/10.1101/490037 
  ​Details  DOI 

• 2018 | Journal Article
  ​ ​Identification and Visualization of a Distinct Microbiome in Ocular Surface Conjunctival Tissue​
  Ozkan, J.; Coroneo, M.; Willcox, M.; Wemheuer, B.   & Thomas, T.​ (2018) 
  Investigative Ophthalmology & Visual Science, 59(10) pp. 4268​-4276​.​ DOI: https://doi.org/10.1167/iovs.18-24651 
  ​Details  DOI  PMID  PMC 

• 2019 | Journal Article
  ​ ​Mo1947 – Taxonomic and Functional Intestinal Dysbiosis in Children with Cystic Fibrosis​
  Coffey, M. J.; Nielsen, S.; Wemheuer, B. ; Garg, M.; Needham, B.; Jaffe, A. & Thomas, T. et al.​ (2019) 
  Gastroenterology, 156(6) art. S-895​.​ DOI: https://doi.org/10.1016/S0016-5085(19)39210-8 
  ​Details  DOI 

• 2019 | Journal Article | 
  ​ ​MetaCHIP: community-level horizontal gene transfer identification through the combination of best-match and phylogenetic approaches​
  Song, W.; Wemheuer, B. ; Zhang, S.; Steensen, K. & Thomas, T.​ (2019) 
  Microbiome, 7(1) art. 36​.​ DOI: https://doi.org/10.1186/s40168-019-0649-y 
  ​Details  DOI 

• 2019 | Journal Article
  ​ ​Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota​
  Zhang, S.; Song, W.; Wemheuer, B. ; Reveillaud, J.; Webster, N. & Thomas, T.​ (2019) 
  mSystems, 4(4).​ DOI: https://doi.org/10.1128/mSystems.00288-19 
  ​Details  DOI  PMID  PMC 

• 2019 | Journal Article
  ​ ​Biogeography of the human ocular microbiota​
  Ozkan, J.; Willcox, M.; Wemheuer, B. ; Wilcsek, G.; Coroneo, M. & Thomas, T.​ (2019) 
  The Ocular Surface, 17(1) pp. 111​-118​.​ DOI: https://doi.org/10.1016/j.jtos.2018.11.005 
  ​Details  DOI  PMID  PMC 

• 2019 | Journal Article | 
  ​ ​Modularity and predicted functions of the global sponge-microbiome network​
  Lurgi, M.; Thomas, T.; Wemheuer, B. ; Webster, N. S. & Montoya, J. M.​ (2019) 
  Nature Communications, 10(1) art. 992​.​ DOI: https://doi.org/10.1038/s41467-019-08925-4 
  ​Details  DOI  PMID  PMC 

• 2019 | Journal Article
  ​ ​Diet and diet-associated bacteria shape early microbiome development in Yellowtail Kingfish (Seriola lalandi)​
  Wilkes Walburn, J.; Wemheuer, B. ; Thomas, T.; Copeland, E.; O'Connor, W.; Booth, M. & Fielder, S. et al.​ (2019) 
  Microbial Biotechnology, 12(2) pp. 275​-288​.​ DOI: https://doi.org/10.1111/1751-7915.13323 
  ​Details  DOI  PMID  PMC 

• 2019 | Journal Article | 
  ​ ​Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis​
  Coffey, M. J.; Nielsen, S.; Wemheuer, B. ; Kaakoush, N. O.; Garg, M.; Needham, B. & Pickford, R. et al.​ (2019) 
  Scientific Reports, 9(1) art. 18593​.​ DOI: https://doi.org/10.1038/s41598-019-55028-7 
  ​Details  DOI  PMID  PMC 

• 2019 | Journal Article | 
  ​ ​Fungal Endophyte Communities of Three Agricultural Important Grass Species Differ in Their Response Towards Management Regimes​
  Wemheuer, B. ; Thomas, T. & Wemheuer, F. ​ (2019) 
  Microorganisms, 7(2) art. 37​.​ DOI: https://doi.org/10.3390/microorganisms7020037 
  ​Details  DOI  PMID  PMC 

• 2020 | Journal Article | 
  ​ ​Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences​
  Wemheuer, F. ; Taylor, J. A.; Daniel, R. ; Johnston, E.; Meinicke, P. ; Thomas, T. & Wemheuer, B. ​ (2020) 
  Environmental Microbiome, 15(1).​ DOI: https://doi.org/10.1186/s40793-020-00358-7 
  ​Details  DOI 

• 2021 | Journal Article | 
  ​ ​Contribution of horizontal gene transfer to the functionality of microbial biofilm on a macroalgae​
  Song, W.; Wemheuer, B. ; Steinberg, P. D.; Marzinelli, E. M. & Thomas, T.​ (2021) 
  The ISME Journal, 15(3) pp. 807​-817​.​ DOI: https://doi.org/10.1038/s41396-020-00815-8 
  ​Details  DOI 

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