Author Wingender, Edgar
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2002 | Journal Article |
S/MARt DB: a database on scaffold/matrix attached regions.
Liebich, I.; Bode, J.; Frisch, M. & Wingender, E. (2002)
NUCLEIC ACIDS RESEARCH, 30(1) pp. 372-374.
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2002 | Journal Article |
TRANSCompel: a database on composite regulatory elements in eukaryotic genes.
Kel-Margoulis, O. V.; Kel, A. E.; Reuter, I.; Deineko, I. V. & Wingender, E. (2002)
Nucleic Acids Research, 30(1) pp. 332-334.
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2003 | Journal Article |
TRANSPATH (R): an integrated database on signal transduction and a tool for array analysis
Krull, M.; Voss, N.; Choi, C.; Pistor, S.; Potapov, A. & Wingender, E. (2003)
Nucleic Acids Research, 31(1) pp. 97-100.
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2003 | Journal Article |
PRODORIC: prokaryotic database of gene regulation.
Munch, R.; Hiller, K.; Barg, H.; Heldt, D.; Linz, S.; Wingender, E. & Jahn, D. (2003)
Nucleic Acids Research, 31(1) pp. 266-269.
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2004 | Conference Abstract
Analysis of the regulatory network of APP, amyloid beta protein precursor, with the signal transcluction database TRANSPATH (R) Professional
Pistor, S.; Choi, C.; Krull, M.; Voss, N.; Potapov, A. P. & Wingender, E. (2004)
European Journal of Cell Biology, 83 Annual Meeting of the Deutschen-Gesellschaft-fur-Zellbiologie, Berlin, Germany.
Jena: Urban & Fischer Verlag.
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2004 | Book Chapter
Isolation and Analysis of Gene Regulatory Sequences
Hehl, R.; Steffens, N. O.& Wingender, E. (2004)
In:Christou, Paul; Klee, Harry (Eds.), Handbook of Plant Biotechnology. Chichester, UK: John Wiley & Sons, Ltd. DOI: https://doi.org/10.1002/0470869143.kc006
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2004 | Conference Abstract
S/MARt DB: The database on chromatin organizing elements
Liebich, I. & Wingender, E. (2004)
European Journal of Cell Biology, 83 Annual Meeting of the Deutschen-Gesellschaft-fur-Zellbiologie, Berlin, Germany.
Jena: Urban & Fischer Verlag.
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2004 | Conference Paper
Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods
Kel, A. E.; Tikunov, Y.; Voss, N. & Wingender, E. (2004)
Bioinformatics, 20(10) pp. 1512-1516. 18th German Conference on Bioinformatics, Tech Univ Munchen, Garching, GERMANY.
Oxford: Oxford Univ Press. DOI: https://doi.org/10.1093/bioinformatics/bth111
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2004 | Review |
TRANSPATH (R) - a high quality database focused on signal transduction
Choi, C.; Krull, M.; Kel, A. E.; Kel-Margoulis, O. V.; Pistor, S.; Potapov, A. P.& Voss, N. et al. (2004)
COMPARATIVE AND FUNCTIONAL GENOMICS, 5(2) pp. 163-168.
John Wiley & Sons Ltd. DOI: https://doi.org/10.1002/cfg.386
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2004 | Journal Article
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources
Crass, T.; Antes, I.; Basekow, R.; Bork, P.; Buning, C.; Christensen, M. & Claussen, H. et al. (2004)
Bioinformatics, 20(2) pp. 268-270. DOI: https://doi.org/10.1093/bioinformatics/btg398
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2005 | Conference Abstract
The TRANSPATH((R)) database: Identifying candidate pathways regulating the ubiquitin ligase parkin, a marker of Parkinson disease
Choi, C.; Kel-Margoulis, O. V.; Kel, A. E.; Krull, M.; Pistor, S.; Voss, N. & Wingender, E. (2005)
European Journal of Cell Biology, 84 Annual Meeting of the Deutsche-Gesellschaft-fur-Zellbiologie, Heidelberg, GERMANY.
Jena: Urban & Fischer Verlag.
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2005 | Journal Article |
Construction of predictive promoter models on the example of antibacterial response of human epithelial cells
Shelest, E. & Wingender, E. (2005)
Theoretical Biology and Medical Modelling, 2 art. 2. DOI: https://doi.org/10.1186/1742-4682-2-2
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2006 | Journal Article | Research Paper
Mining the genome and regulatory networks
Potapov, A. P. & Wingender, E. (2006)
Genome Biology, 7(3) art. 309. DOI: https://doi.org/10.1186/gb-2006-7-3-309
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2006 | Journal Article
EndoNet: an information resource about endocrine networks
Potapov, A. P.; Liebich, I.; Doenitz, J.; Schwarzer, K.; Sasse, N.; Schoeps, T. & Crass, T. et al. (2006)
Nucleic Acids Research, 34 pp. D540-D545. DOI: https://doi.org/10.1093/nar/gkj121
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2006 | Journal Article
TRANSPATH (R): an information resource for storing and visualizing signaling pathways and their pathological aberrations
Krull, M.; Pistor, S.; Voss, N.; Kel, A. E.; Reuter, I.; Kronenberg, D. & Michael, H. et al. (2006)
Nucleic Acids Research, 34 pp. D546-D551. DOI: https://doi.org/10.1093/nar/gkj107
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2006 | Conference Paper |
Beyond microarrays: Finding key transcription factors controlling signal transduction pathways
Kel, A. E.; Voss, N.; Jauregui, R.; Kel-Margoulis, O. & Wingender, E. (2006)
BMC Bioinformatics, 7 3rd Annual Conference of the MidSouth-Computational-Biology-and-Bioinformatics-Society, Baton Rouge, LA.
London: Biomed Central Ltd. DOI: https://doi.org/10.1186/1471-2105-7-S2-S13
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2006 | Journal Article
Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations
Kel, A. E.; Konovalova, T.; Waleev, T.; Cheremushkin, E.; Kel-Margoulis, O. V. & Wingender, E. (2006)
Bioinformatics, 22(10) pp. 1190-1197. DOI: https://doi.org/10.1093/bioinformatics/btl041
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2006 | Journal Article
Evaluating phylogenetic footprinting for human-rodent comparisons
Sauer, T.; Shelest, E. & Wingender, E. (2006)
Bioinformatics, 22(4) pp. 430-437. DOI: https://doi.org/10.1093/bioinformatics/bti819
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2006 | Journal Article |
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm
Waleev, T.; Shtokalo, D.; Konovalova, T.; Voss, N.; Cheremushkin, E.; Stegmaier, P. & Kel-Margoulis, O. V. et al. (2006)
Nucleic Acids Research, 34 pp. W541-W545. DOI: https://doi.org/10.1093/nar/gkl342
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