Prof. Dr. Jörg Stülke

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  • 2023 | Journal Article | 
    ​ ​Ornithine is the central intermediate in the arginine degradative pathway and its regulation in Bacillus subtilis​
    Warneke, R.; Garbers, T. B.; Herzberg, C.; Aschenbrandt, G.; Ficner, R. & Stülke, J. ​ (2023) 
    The Journal of Biological Chemistry, art. 104944​.​ DOI: https://doi.org/10.1016/j.jbc.2023.104944 
    ​Details  DOI 
  • 2023 | Journal Article
    ​ ​Bacillus subtilis, a Swiss Army Knife in Science and Biotechnology​
    Stülke, J. ; Grüppen, A.; Bramkamp, M. & Pelzer, S.​ (2023) 
    Journal of Bacteriology, 205(5) art. e00102-23​.​ DOI: https://doi.org/10.1128/jb.00102-23 
    ​Details  DOI 
  • 2023 | Journal Article
    ​ ​PAE viewer: a webserver for the interactive visualization of the predicted aligned error for multimer structure predictions and crosslinks​
    Elfmann, C. & Stülke, J. ​ (2023) 
    Nucleic Acids Research, art. gkad350​.​ DOI: https://doi.org/10.1093/nar/gkad350 
    ​Details  DOI 
  • 2023 | Journal Article | Overview
    ​ ​Understudied proteins and understudied functions in the model bacterium Bacillus subtilis —A major challenge in current research​
    Wicke, D.; Meißner, J.; Warneke, R.; Elfmann, C. & Stülke, J. ​ (2023) 
    Molecular Microbiology, art. mmi.15053​.​ DOI: https://doi.org/10.1111/mmi.15053 
    ​Details  DOI  PMID  PMC 
  • 2022 | Journal Article | Research Paper | 
    ​ ​MycoWiki: Functional annotation of the minimal model organism Mycoplasma pneumoniae​
    Elfmann, C.; Zhu, B.; Pedreira, T.; Hoßbach, B.; Lluch-Senar, M.; Serrano, L. & Stülke, J. ​ (2022) 
    Frontiers in Microbiology, 13 art. 935066​.​ DOI: https://doi.org/10.3389/fmicb.2022.935066 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​Unchaining mini Bacillus Strain PG10: Relief of FlgM-Mediated Repression of Autolysin Genes​
    van Tilburg, A. Y.; Fülleborn, J. A.; Reder, A.; Völker, U. ; Stülke, J. ; van Heel, A. J. & Kuipers, O. P.​ (2021) 
    Applied and Environmental Microbiology, 87(18).​ DOI: https://doi.org/10.1128/AEM.01123-21 
    ​Details  DOI 
  • 2021 | Journal Article
    ​ ​Syn Wiki : Functional annotation of the first artificial organism Mycoplasma mycoides JCVI‐syn3A​
    Pedreira, T.; Elfmann, C.; Singh, N. & Stülke, J. ​ (2021) 
    Protein Science,.​ DOI: https://doi.org/10.1002/pro.4179 
    ​Details  DOI 
  • 2021 | Journal Article | Research Paper | 
    ​ ​Essentiality of c-di-AMP in Bacillus subtilis: Bypassing mutations converge in potassium and glutamate homeostasis​
    Krüger, L.; Herzberg, C.; Rath, H.; Pedreira, T.; Ischebeck, T. ; Poehlein, A.   & Gundlach, J. et al.​ (2021) 
    PLoS Genetics, 17(1) art. e1009092​.​ DOI: https://doi.org/10.1371/journal.pgen.1009092 
    ​Details  DOI 
  • 2021 | Journal Article | 
    ​ ​Influence of the ABC Transporter YtrBCDEF of Bacillus subtilis on Competence, Biofilm Formation and Cell Wall Thickness​
    Benda, M.; Schulz, L. M.; Stülke, J.   & Rismondo, J. ​ (2021) 
    Frontiers in Microbiology, 12.​ DOI: https://doi.org/10.3389/fmicb.2021.587035 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Role of DNA repair in Bacillus subtilis spore resistance to high energy and low energy electron beam treatments​
    Zhang, Y.; Huber, N.; Moeller, R.; Stülke, J. ; Dubovcova, B.; Akepsimaidis, G. & Meneses, N. et al.​ (2020) 
    Food Microbiology, 87 pp. 103353​.​ DOI: https://doi.org/10.1016/j.fm.2019.103353 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Cyclic di-AMP Signaling in Bacteria​
    Stülke, J.   & Krüger, L.​ (2020) 
    Annual Review of Microbiology, 74(1) pp. 159​-179​.​ DOI: https://doi.org/10.1146/annurev-micro-020518-115943 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Comparison of Proteomic Responses as Global Approach to Antibiotic Mechanism of Action Elucidation​
    Senges, C. H. R.; Stepanek, J. J.; Wenzel, M.; Raatschen, N.; Ay, Ü.; Märtens, Y. & Prochnow, P. et al.​ (2020) 
    Antimicrobial Agents and Chemotherapy, 65(1) pp. e01373-20​.​ DOI: https://doi.org/10.1128/AAC.01373-20 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​MiniBacillus PG10 as a Convenient and Effective Production Host for Lantibiotics​
    van Tilburg, A. Y.; van Heel, A. J.; Stülke, J. ; de Kok, N. A. W.; Rueff, A.-S. & Kuipers, O. P.​ (2020) 
    ACS Synthetic Biology, 9(7) pp. 1833​-1842​.​ DOI: https://doi.org/10.1021/acssynbio.0c00194 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Resistance to serine in Bacillus subtilis : identification of the serine transporter YbeC and of a metabolic network that links serine and threonine metabolism​
    Klewing, A.; Koo, B.; Krüger, L.; Poehlein, A. ; Reuß, D.; Daniel, R.   & Gross, C. A. et al.​ (2020) 
    Environmental Microbiology, 22(9) pp. 3937​-3949​.​ DOI: https://doi.org/10.1111/1462-2920.15179 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​In-cell architecture of an actively transcribing-translating expressome​
    O’Reilly, F. J.; Xue, L.; Graziadei, A.; Sinn, L.; Lenz, S.; Tegunov, D.   & Blötz, C. et al.​ (2020) 
    Science, 369(6503) pp. 554​-557​.​ DOI: https://doi.org/10.1126/science.abb3758 
    ​Details  DOI 
  • 2020 | Journal Article
    ​ ​Two Ways To Convert a Low-Affinity Potassium Channel to High Affinity: Control of Bacillus subtilis KtrCD by Glutamate​
    Krüger, L.; Herzberg, C.; Warneke, R.; Poehlein, A. ; Stautz, J.; Weiß, M. & Daniel, R.  et al.​ (2020) 
    Journal of Bacteriology, 202(12).​ DOI: https://doi.org/10.1128/JB.00138-20 
    ​Details  DOI 
  • 2020 | Journal Article | 
    ​ ​Characterization of an Immunoglobulin Binding Protein (IbpM) From Mycoplasma pneumoniae​
    Blötz, C.; Singh, N.; Dumke, R. & Stülke, J. ​ (2020) 
    Frontiers in Microbiology, 11.​ DOI: https://doi.org/10.3389/fmicb.2020.00685 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Recent Advances and Current Trends in Nucleotide Second Messenger Signaling in Bacteria​
    Hengge, R.; Häussler, S.; Pruteanu, M.; Stülke, J. ; Tschowri, N. & Turgay, K.​ (2019) 
    Journal of Molecular Biology, 431(5) pp. 908​-927​.​ DOI: https://doi.org/10.1016/j.jmb.2019.01.014 
    ​Details  DOI 
  • 2019 | Journal Article | Editorial Contribution (Editorial, Introduction, Epilogue)
    ​ ​Editorial​
    Jung, K.; Gerland, U. & Stülke, J. ​ (2019) 
    Journal of Molecular Biology, 431(23) pp. 4529​.​ DOI: https://doi.org/10.1016/j.jmb.2019.11.001 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​The KupA and KupB Proteins of Lactococcus lactis IL1403 Are Novel c-di-AMP Receptor Proteins Responsible for Potassium Uptake​
    Quintana, I. M.; Gibhardt, J.; Turdiev, A.; Hammer, E.; Commichau, F. M. ; Lee, V. T. & Magni, C. et al.​ (2019) 
    Journal of Bacteriology, 201(10).​ DOI: https://doi.org/10.1128/JB.00028-19 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Making and Breaking of an Essential Poison: the Cyclases and Phosphodiesterases That Produce and Degrade the Essential Second Messenger Cyclic di-AMP in Bacteria​
    Commichau, F. M. ; Heidemann, J. L.; Ficner, R.   & Stülke, J. ​ (2019) 
    Journal of Bacteriology, 201(1).​ DOI: https://doi.org/10.1128/JB.00462-18 
    ​Details  DOI 
  • 2019 | Journal Article
    ​ ​Sustained sensing in potassium homeostasis: Cyclic di-AMP controls potassium uptake by KimA at the levels of expression and activity​
    Gundlach, J.; Krüger, L.; Herzberg, C.; Turdiev, A.; Poehlein, A. ; Tascón, I. & Weiss, M. et al.​ (2019) 
    Journal of Biological Chemistry, 294(24) pp. 9605​-9614​.​ DOI: https://doi.org/10.1074/jbc.RA119.008774 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Topoisomerase IV can functionally replace all type 1A topoisomerases in Bacillus subtilis​
    Reuß, D. R; Faßhauer, P.; Mroch, P. J.; Ul-Haq, I.; Koo, B.-M.; Pöhlein, A. & Gross, C. A et al.​ (2019) 
    Nucleic Acids Research, 47(10) pp. 5231​-5242​.​ DOI: https://doi.org/10.1093/nar/gkz260 
    ​Details  DOI 
  • 2019 | Journal Article | 
    ​ ​Determination of the Gene Regulatory Network of a Genome-Reduced Bacterium Highlights Alternative Regulation Independent of Transcription Factors​
    Yus, E.; Lloréns-Rico, V.; Martínez, S.; Gallo, C.; Eilers, H.; Blötz, C. & Stülke, J.  et al.​ (2019) 
    Cell Systems, 9(2) pp. 143​-158.e13​.​ DOI: https://doi.org/10.1016/j.cels.2019.07.001 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Development of a replicating plasmid based on the native oriC in Mycoplasma pneumoniae​
    Blötz, C.; Lartigue, C.; Valverde Timana, Y.; Ruiz, E.; Paetzold, B.; Busse, J. & Stülke, J. ​ (2018) 
    Microbiology, 164(11) pp. 1372​-1382​.​ DOI: https://doi.org/10.1099/mic.0.000711 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​A Delicate Connection: c-di-AMP Affects Cell Integrity by Controlling Osmolyte Transport​
    Commichau, F. M. ; Gibhardt, J.; Halbedel, S.; Gundlach, J. & Stülke, J. ​ (2018) 
    Trends in Microbiology, 26(3) pp. 175​-185​.​ DOI: https://doi.org/10.1016/j.tim.2017.09.003 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Structural basis for the regulatory interaction of the methylglyoxal synthase MgsA with the carbon flux regulator Crh in Bacillus subtilis​
    Dickmanns, A. ; Zschiedrich, C. P.; Arens, J.; Parfentev, I.; Gundlach, J.; Hofele, R. & Neumann, P.  et al.​ (2018) 
    Journal of Biological Chemistry, 293(16) pp. 5781​-5792​.​ DOI: https://doi.org/10.1074/jbc.RA117.001289 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Selective Pressure for Biofilm Formation in Bacillus subtilis : Differential Effect of Mutations in the Master Regulator SinR on Bistability​
    Kampf, J.; Gerwig, J.; Kruse, K.; Cleverley, R.; Dormeyer, M.; Grünberger, A. & Kohlheyer, D. et al.​ (2018) 
    mBio, 9(5).​ DOI: https://doi.org/10.1128/mBio.01464-18 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​Changes of DNA topology affect the global transcription landscape and allow rapid growth of a Bacillus subtilis mutant lacking carbon catabolite repression​
    Reuß, D. R.; Rath, H.; Thürmer, A.; Benda, M.; Daniel, R. ; Völker, U.   & Mäder, U. et al.​ (2018) 
    Metabolic Engineering, 45 pp. 171​-179​.​ DOI: https://doi.org/10.1016/j.ymben.2017.12.004 
    ​Details  DOI 
  • 2018 | Journal Article
    ​ ​The DEAD-Box RNA Helicases of Bacillus subtilis as a Model to Evaluate Genetic Compensation Among Duplicate Genes​
    González-Gutiérrez, J. A.; Díaz-Jiménez, D. F.; Vargas-Pérez, I.; Guillén-Solís, G.; Stülke, J.   & Olmedo-Álvarez, G.​ (2018) 
    Frontiers in Microbiology, 9.​ DOI: https://doi.org/10.3389/fmicb.2018.02261 
    ​Details  DOI 
  • 2018 | Journal Article | 
    ​ ​Genetic Engineering of Lactococcus lactis Co-producing Antigen and the Mucosal Adjuvant 3′ 5′- cyclic di Adenosine Monophosphate (c-di-AMP) as a Design Strategy to Develop a Mucosal Vaccine Prototype​
    Quintana, I.; Espariz, M.; Villar, S. R.; González, F. B.; Pacini, M. F.; Cabrera, G. & Bontempi, I. et al.​ (2018) 
    Frontiers in Microbiology, 9.​ DOI: https://doi.org/10.3389/fmicb.2018.02100 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​SubtiWiki in 2018: from genes and proteins to functional network annotation of the model organism Bacillus subtilis​
    Zhu, B. & Stülke, J. ​ (2017) 
    Nucleic Acids Research, 46(D1) pp. D743​-D748​.​ DOI: https://doi.org/10.1093/nar/gkx908 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Adaptation of Bacillus subtilis to Life at Extreme Potassium Limitation​
    Gundlach, J.; Herzberg, C.; Hertel, D. ; Thürmer, A.; Daniel, R. ; Link, H. & Stülke, J. ​ (2017) 
    mBio, 8(4).​ DOI: https://doi.org/10.1128/mBio.00861-17 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Control of potassium homeostasis is an essential function of the second messenger cyclic di-AMP in Bacillus subtilis​
    Gundlach, J.; Herzberg, C.; Kaever, V.; Gunka, K.; Hoffmann, T.; Weiss, M. & Gibhardt, J. et al.​ (2017) 
    Science Signaling, 10(475) art. eaal3011​.​ DOI: https://doi.org/10.1126/scisignal.aal3011 
    ​Details  DOI  WoS 
  • 2017 | Journal Article
    ​ ​Perspective of ions and messengers: an intricate link between potassium, glutamate, and cyclic di-AMP​
    Gundlach, J.; Commichau, F. M.   & Stülke, J. ​ (2017) 
    Current Genetics, 64(1) pp. 191​-195​.​ DOI: https://doi.org/10.1007/s00294-017-0734-3 
    ​Details  DOI 
  • 2017 | Journal Article | Erratum
    ​ ​Erratum to: Perspective of ions and messengers: an intricate link between potassium, glutamate, and cyclic di-AMP​
    Gundlach, J.; Commichau, F. M.   & Stülke, J. ​ (2017) 
    Current Genetics, 64(1) pp. 197​-197​.​ DOI: https://doi.org/10.1007/s00294-017-0745-0 
    ​Details  DOI 
  • 2017 | Journal Article
    ​ ​Glycerol metabolism and its implication in virulence in Mycoplasma​
    Blötz, C. & Stülke, J. ​ (2017) 
    FEMS Microbiology Reviews, 41(5) pp. 640​-652​.​ DOI: https://doi.org/10.1093/femsre/fux033 
    ​Details  DOI 
  • 2017 | Journal Article | 
    ​ ​The contribution of bacterial genome engineering to sustainable development​
    Reuß, D. R.; Commichau, F. M.   & Stülke, J. ​ (2017) 
    Microbial Biotechnology, 10(5) pp. 1259​-1263​.​ DOI: https://doi.org/10.1111/1751-7915.12784 
    ​Details  DOI 
  • 2016 | Journal Article
    ​ ​Complete Genome Sequence of Bacillus subtilis subsp. subtilis Strain ∆6​
    Reuß, D. R.; Thürmer, A.; Daniel, R. ; Quax, W. J. & Stülke, J. ​ (2016) 
    Genome Announcements, 4(4).​ DOI: https://doi.org/10.1128/genomeA.00759-16 
    ​Details  DOI 
  • 2016 | Review
    ​ ​The Blueprint of a Minimal Cell: MiniBacillus​
    Reuß, D. R.; Commichau, F. M. ; Gundlach, J.; Zhu, B.& Stülke, J. ​ (2016)
    Microbiology and Molecular Biology Reviews, 80​(4) pp. 955​-987​.​
    Amer Soc Microbiology. DOI: https://doi.org/10.1128/MMBR.00029-16 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | Research Paper
    ​ ​Structural and Biochemical Analysis of the Essential Diadenylate Cyclase CdaA from Listeria monocytogenes​
    Rosenberg, J. M.; Dickmanns, A. ; Neumann, P. ; Gunka, K. ; Arens, J.; Kaever, V. & Stuelke, J.  et al.​ (2015) 
    Journal of biological chemistry, 290(10) pp. 6596​-6606​.​ DOI: https://doi.org/10.1074/jbc.M114.630418 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Review
    ​ ​A jack of all trades: the multiple roles of the unique essential second messenger cyclic di-AMP​
    Commichau, F. M. ; Dickmanns, A. ; Gundlach, J.; Ficner, R.  & Stuelke, J. ​ (2015)
    Molecular Microbiology, 97​(2) pp. 189​-204​.​
    Wiley-blackwell. DOI: https://doi.org/10.1111/mmi.13026 
    ​Details  DOI  PMID  PMC  WoS 
  • 2015 | Journal Article | Research Paper
    ​ ​Identification, Characterization, and Structure Analysis of the Cyclic di-AMP-binding P-II-like Signal Transduction Protein DarA​
    Gundlach, J.; Dickmanns, A. ; Schröder-Tittmann, K. ; Neumann, P. ; Kaesler, J.; Kampf, J. & Herzberg, C. et al.​ (2015) 
    Journal of biological chemistry, 290(5) pp. 3069​-3080​.​ DOI: https://doi.org/10.1074/jbc.M114.619619 
    ​Details  DOI  PMID  PMC  WoS 
  • 2014 | Journal Article
    ​ ​The protein tyrosine kinases EpsB and PtkA differentially affect biofilm formation in Bacillus subtilis​
    Gerwig, J.; Kiley, T. B.; Gunka, K.; Stanley-Wall, N. & Stuelkel, J. ​ (2014) 
    Microbiology, 160 pp. 682​-691​.​ DOI: https://doi.org/10.1099/mic.0.074971-0 
    ​Details  DOI  PMID  PMC  WoS 
  • 2012 | Journal Article | Research Paper
    ​ ​Determinants of Interaction Specificity of the Bacillus subtilis GlcT Antitermination Protein FUNCTIONALITY AND PHOSPHORYLATION SPECIFICITY DEPEND ON THE ARRANGEMENT OF THE REGULATORY DOMAINS​
    Himmel, S.; Zschiedrich, C. P.; Becker, S. ; Hsiao, H.-H.; Wolff, S.; Diethmaier, C. & Urlaub, H.  et al.​ (2012) 
    Journal of biological chemistry, 287(33) pp. 27731​-27742​.​ DOI: https://doi.org/10.1074/jbc.M112.388850 
    ​Details  DOI  PMID  PMC  WoS 

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